Match details
Record ID: |
MK833947.1 |
Database: |
nt |
Go to original record |
Description: |
Dicliptera ruiziana chloroplast, complete genome. |
Taxon: |
Dicliptera ruiziana |
Original size: |
150750 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46229 |
46768 |
+ |
540 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tagtatggaa
51 acctactaag tgctaacttt caaattcaga gaaaccctgg aattaataaa
101 aaagggcaat cctgagccaa atcctctttt cgcaagataa aggttcagaa
151 aacgaaaaag ggataggtgc agagactcaa tggaagctgt tctaacttgg
201 ctgcattggt agaggaatcg ttccatcaaa acttccgaaa ggaaaaatct
251 atctattgaa tattatatca acagattaga tggcgcacat ctgtattttg
301 tatttgtatt tttttatatg caaaatggaa gaattgatgt gaattgattc
351 cacattgaag aacgagtcga atattcattt attcattcac caaacatcaa
401 atcattcact ccatagtcta gcggacgaga ataaagatag agtcccattc
451 cacatgtcaa taccggcaac aatgaaattt ttagtaagag gaaaatccgt
501 cgacttttaa aatcgtgagg gttcaagtcc ctctatcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.43e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
540 |
521 |
2.43e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.