Match details
Record ID: |
MK854997.1 |
Database: |
nt |
Go to original record |
Description: |
Calligonum junceum isolate J2 chloroplast, complete genome. |
Taxon: |
Calligonum junceum |
Original size: |
162459 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
50839 |
51432 |
+ |
594 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gtttgagcct tagtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aattaaaaaa
101 aatgggcaat cctgagccaa ctccttcttt acaaaaggaa gaataaaaaa
151 gggataggtg cagagactca atggaagctg ttctaacaaa tggagttaac
201 ggtcttgcgt tgttataaga attcttccat cgaaactcca aaaaggatga
251 agaataaacc tatacgcata catacgtaaa tataaatact acatctatat
301 taatgaaatt caaaaataaa atcttgatga cgacccgaat tttggtttta
351 tgactatgaa aaaatggaag aattgttgtg aatcgattcc aagttgagga
401 aagaatcgaa tattcgttta gtaaattaaa acatctagtc accagtctga
451 tagatctttt gaagaaccga tccatcggat gagaatgaag atagagtccc
501 attctacgtg tcaatcctga caacaatgaa atttatagta agaggaaaat
551 ccgtcgactt tataaatcgt gagggttcaa gtccctctat cccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
594 |
575 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.