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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MK593554.1 nt Iseilema membranaceum isolate 07Im ... 139647 bp Iseilema membranaceum QL-PLN-00-007 525 bp View
MK593557.1 nt Lasiurus scindicus voucher K:AN-DJI... 139466 bp Lasiurus scindicus QL-PLN-00-007 525 bp View
MK593558.1 nt Melinis minutiflora voucher K:MSV60... 139773 bp Melinis minutiflora QL-PLN-00-007 618 bp View
MK593559.1 nt Paspalum vaginatum isolate SRR41363... 140470 bp Paspalum vaginatum QL-PLN-00-007 617 bp View
MK609928.1 nt Glechoma longituba chloroplast, com... 153069 bp Glechoma longituba QL-PLN-00-007 554 bp View
MK618176.1 nt Paulownia elongata chloroplast, com... 154688 bp Paulownia elongata QL-PLN-00-007 566 bp View
MK618177.1 nt Paulownia taiwaniana isolate Paulow... 154247 bp Paulownia taiwaniana QL-PLN-00-007 565 bp View
MK618178.1 nt Paulownia kawakamii chloroplast, co... 154107 bp Paulownia kawakamii QL-PLN-00-007 565 bp View
MK618179.1 nt Paulownia fargesii chloroplast, com... 154692 bp Paulownia fargesii QL-PLN-00-007 566 bp View
MK618180.1 nt Paulownia fortunei chloroplast, com... 154676 bp Paulownia fortunei QL-PLN-00-007 566 bp View
MK618181.1 nt Paulownia catalpifolia chloroplast,... 154694 bp Paulownia catalpifolia QL-PLN-00-007 566 bp View
MK642356.1 nt Fritillaria taipaiensis chloroplast... 151785 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
MK656960.1 nt Laguncularia racemosa isolate LGBH0... 160672 bp Laguncularia racemosa QL-PLN-00-007 598 bp View
MK679768.1 nt Dendrocalamus sinicus chloroplast, ... 139446 bp Dendrocalamus sinicus QL-PLN-00-007 613 bp View
MK679778.1 nt Dendrocalamus barbatus var. interno... 139423 bp Dendrocalamus barbatus var. internodiiradicatus QL-PLN-00-007 613 bp View
MK679791.1 nt Dendrocalamus minor var. amoenus ch... 139458 bp Dendrocalamus minor var. amoenus QL-PLN-00-007 613 bp View
MK679793.1 nt Melocalamus compactiflorus var. fim... 139459 bp Melocalamus compactiflorus var. fimbriatus QL-PLN-00-007 613 bp View
MK726018.1 nt Larrea tridentata chloroplast, comp... 135988 bp Larrea tridentata QL-PLN-00-007 601 bp View
MK753242.1 nt Lilium leichtlinii var. maximowiczi... 152604 bp Lilium leichtlinii var. maximowiczii QL-PLN-00-007 608 bp View
MK757466.1 nt Lilium lankongense chloroplast, com... 152611 bp Lilium lankongense QL-PLN-00-007 609 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.