Match details
Record ID: |
MK618177.1 |
Database: |
nt |
Go to original record |
Description: |
Paulownia taiwaniana isolate Paulownia australis chloroplast, complete genome. |
Taxon: |
Paulownia taiwaniana |
Original size: |
154247 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47626 |
48190 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaacccccgg aattaagaaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201 aaatggagtt gactgcgttg gtagaggaat ctttccatcg aaacttcaga
251 aaggatgacg gataaacgta tctattgaat actatatcaa atgattaatg
301 atggcccgaa tctgtatctg ttttttttaa tatgaaaaaa tgaaagaatt
351 ggtgtgaatt gattccacat tgaagaaaaa gttgaatatt cattcatcaa
401 atcattcact ccatagtccg atagatcttt taaagaactg attaatcgga
451 cgagaataaa gatagagtcc cattctacat gtcaataccg gcaacaagga
501 aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca
551 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.