Match details
Record ID: |
MK618176.1 |
Database: |
nt |
Go to original record |
Description: |
Paulownia elongata chloroplast, complete genome. |
Taxon: |
Paulownia elongata |
Original size: |
154688 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48061 |
48626 |
+ |
566 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaacccccgg aattaagaaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa
201 caaatggagt tgactgcgtt ggtagaggaa tctttccatc gaaacttcag
251 aaaggatgac ggataaacgt atctattgaa tactatatca aatgattaat
301 gatggcccga atctgtatct gtttttttta atatgaaaaa atgaaagaat
351 tggtgtgaat tgattccaca ttgaagaaaa agttgaatat tcattcatca
401 aatcattcac tccatagtcc gatagatctt ttaaagaact gattaatcgg
451 acgagaataa agatagagtc ccattctaca tgtcaatacc ggcaacaagg
501 aaatttatag taagaggaaa atccgtcgac tttaaaaatc gtgagggttc
551 aagtccctct atcccc
View other 7 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
566 |
547 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.