Match details
Record ID: |
MK656960.1 |
Database: |
nt |
Go to original record |
Description: |
Laguncularia racemosa isolate LGBH01 chloroplast, complete genome. |
Taxon: |
Laguncularia racemosa |
Original size: |
160672 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
37046 |
37643 |
- |
598 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgacaacttt caaattcaga gaaaccctgg aattcaaaaa
101 aatgggtaat cctgagccaa atcctatttt atgaaaacca acaaaacaac
151 aaagattcat aaagcaagaa taaaaaaagg ataggtgcag agactcaatg
201 gaagctgttc taacaaatgg agttgagcat gttgcgttgg tattggtaaa
251 ggaattcttt tatcgaaact ccagaaaggg aaaaaatgaa agataaacct
301 atatgcatac gtactgaata ctatctcaaa tgattaatga cgacgtgaat
351 ctcatctttt tctatatgaa aacgaaacga attgttgtga atcaattcga
401 agttgaaaaa agaatcgaat attcattgat taaatcattt cctccatggt
451 ctgagaaatc ttttgaagag cggattaatc agacgagaat aaagatagag
501 tcccattcta catgtcaata ctgacaacaa tgaaatttat agtaagagga
551 aaatccgtcg actttataaa tcgtgagggt tcaagtccct ctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.69e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
598 |
579 |
2.69e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.