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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MK353209.1 nt Coffea arabica isolate HP1 chloropl... 155191 bp Coffea arabica QL-PLN-00-007 570 bp View
MK353212.1 nt Coffea arabica isolate IN1 chloropl... 155277 bp Coffea arabica QL-PLN-00-007 570 bp View
MK358447.1 nt Impatiens glandulifera isolate HB92... 152260 bp Impatiens glandulifera QL-PLN-00-007 596 bp View
MK381316.1 nt Mazus pumilus chloroplast, complete... 153034 bp Mazus pumilus QL-PLN-00-007 567 bp View
MK393365.1 nt Ampelocalamus breviligulatus chloro... 139311 bp Ampelocalamus breviligulatus QL-PLN-00-007 614 bp View
MK393366.1 nt Ampelocalamus hirsutissimus chlorop... 139471 bp Ampelocalamus hirsutissimus QL-PLN-00-007 614 bp View
MK393367.1 nt Ampelocalamus luodianensis chloropl... 139600 bp Ampelocalamus luodianensis QL-PLN-00-007 614 bp View
MK393368.1 nt Ampelocalamus melicoideus chloropla... 139588 bp Ampelocalamus melicoideus QL-PLN-00-007 614 bp View
MK393369.1 nt Ampelocalamus microphyllus chloropl... 139488 bp Ampelocalamus microphyllus QL-PLN-00-007 614 bp View
MK393370.1 nt Ampelocalamus patellaris chloroplas... 139588 bp Ampelocalamus patellaris QL-PLN-00-007 614 bp View
MK393371.1 nt Ampelocalamus scandens chloroplast,... 139504 bp Ampelocalamus scandens QL-PLN-00-007 614 bp View
MK393372.1 nt Ampelocalamus saxatilis chloroplast... 139643 bp Ampelocalamus saxatilis QL-PLN-00-007 614 bp View
MK393373.1 nt Ampelocalamus yongshanensis chlorop... 139633 bp Ampelocalamus yongshanensis QL-PLN-00-007 614 bp View
MK393374.1 nt Ampelocalamus mianningensis chlorop... 139600 bp Ampelocalamus mianningensis QL-PLN-00-007 614 bp View
MK397882.1 nt Oxyria sinensis voucher 14CS9034 (K... 156034 bp Oxyria sinensis QL-PLN-00-007 601 bp View
MK397903.1 nt Tetragonia tetragonioides voucher 1... 153258 bp Tetragonia tetragonoides QL-PLN-00-007 610 bp View
MK397916.1 nt Barbeuia madagascariensis voucher R... 132939 bp Barbeuia madagascariensis QL-PLN-00-007 616 bp View
MK397927.1 nt Phemeranthus sp. GY-2019 plastid, p... 158209 bp Phemeranthus sp. GY-2019 QL-PLN-00-007 598 bp View
MK433200.1 nt Chelidonium majus chloroplast, comp... 159741 bp Chelidonium majus QL-PLN-00-007 597 bp View
MK441675.1 nt Hemiboea sp. ZH-2019 voucher Q. Zha... 949 bp Hemiboea sp. ZH-2019 QL-PLN-00-007 549 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.