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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MG709454.1 nt Hopia obtusa voucher KL71 tRNA-Leu ... 616 bp Hopia obtusa QL-PLN-00-007 616 bp View
MG709455.1 nt Bothriochloa hybrida voucher KL72 t... 525 bp Bothriochloa hybrida QL-PLN-00-007 525 bp View
MG709457.1 nt Sorghastrum nutans voucher KL74 tRN... 527 bp Sorghastrum nutans QL-PLN-00-007 527 bp View
MG709459.1 nt Schizachyrium scoparium voucher KL7... 525 bp Schizachyrium scoparium QL-PLN-00-007 525 bp View
MG709461.1 nt Sorghum halepense voucher KL81 tRNA... 523 bp Sorghum halepense QL-PLN-00-007 523 bp View
MG729825.1 nt Lycium ruthenicum chloroplast, comp... 154869 bp Lycium ruthenicum QL-PLN-00-007 571 bp View
MG792012.1 nt Burmannia disticha chloroplast, com... 157480 bp Burmannia disticha QL-PLN-00-007 586 bp View
MG831839.1 nt Adenocalymma ackermannii chloroplas... 150778 bp Adenocalymma ackermannii QL-PLN-00-007 566 bp View
MG831841.1 nt Adenocalymma acutissimum chloroplas... 154114 bp Adenocalymma acutissimum QL-PLN-00-007 567 bp View
MG831842.1 nt Adenocalymma adenophorum chloroplas... 142857 bp Adenocalymma adenophorum QL-PLN-00-007 564 bp View
MG831843.1 nt Adenocalymma apurense chloroplast, ... 137265 bp Adenocalymma apurense QL-PLN-00-007 569 bp View
MG831844.1 nt Adenocalymma calcareum chloroplast,... 115485 bp Adenocalymma calcareum QL-PLN-00-007 566 bp View
MG831845.1 nt Adenocalymma cauliflorum chloroplas... 82092 bp Adenocalymma cauliflorum QL-PLN-00-007 567 bp View
MG831846.1 nt Adenocalymma cinereum chloroplast, ... 156320 bp Adenocalymma cinereum QL-PLN-00-007 567 bp View
MG831847.1 nt Adenocalymma cladotrichum chloropla... 152635 bp Adenocalymma cladotrichum QL-PLN-00-007 567 bp View
MG831848.1 nt Adenocalymma coriaceum chloroplast,... 159895 bp Adenocalymma coriaceum QL-PLN-00-007 566 bp View
MG831850.1 nt Adenocalymma dichilum chloroplast, ... 148278 bp Adenocalymma dichilum QL-PLN-00-007 567 bp View
MG831852.1 nt Adenocalymma dusenii chloroplast, p... 154483 bp Adenocalymma dusenii QL-PLN-00-007 567 bp View
MG831853.1 nt Adenocalymma flaviflorum chloroplas... 136621 bp Adenocalymma flaviflorum QL-PLN-00-007 567 bp View
MG831854.1 nt Adenocalymma gibbosum chloroplast, ... 143011 bp Adenocalymma gibbosum QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.