Match details
Record ID: |
MG831843.1 |
Database: |
nt |
Go to original record |
Description: |
Adenocalymma apurense chloroplast, partial genome. |
Taxon: |
Adenocalymma apurense |
Original size: |
137265 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
42533 |
43101 |
+ |
569 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctttttt ctcaaaacaa aggttcagaa
151 aaggaaaaaa aggataggtg cagagactcg atggaagctg ttctaacaaa
201 tggagttggc tgccttggta gaggaatctt tccatcgaaa cttcagaaag
251 gatgaaggat aaacgtatct attgaatact atatcaatag attagtgata
301 gcccgaatct gtatctgtat ttttttttta tagtatatga aaaatggaag
351 aattagtgtg aattgattac acattgaaga aagaatcgaa tattcattca
401 tcaaatcatt cactccatag tccgatagtt cttttaaaga actgattaag
451 cggacgagaa taaagataga gtcccattct acatgtcaat accggcaaca
501 atgaaattta tagtaagagg aaaatccgtc gacttttaaa atcgtgaggg
551 ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
569 |
550 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.