Match details
Record ID: |
MG709457.1 |
Database: |
nt |
Go to original record |
Description: |
Sorghastrum nutans voucher KL74 tRNA-Leu (trnL) gene, partial sequence; chloroplast. |
Taxon: |
Sorghastrum nutans |
Original size: |
527 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
527 |
+ |
527 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttgttttt gaaaaaacaa gtggttctca
151 aactagaacc caaaggaaaa ggataggtgc agagactcaa tggaagctgt
201 tctaacgaat cgaagtaata acgattaatc acagaaccca tattataata
251 taggttcttt attttatttt tagaatgaaa ttaggaatga ttatgaaata
301 gaaaattcat aattttttta gaattattgt gaatctattc caatcgaata
351 ttgagtaatc aaatccttca attcattggt ttcgagatct tttaaaaagt
401 ggattaatcg gacgaggata aagagagagt cccattctac atgtcaatac
451 tgacaacaat gaaatttcta gtaaaaggaa aatccgtcga ctttataagt
501 cgtgagggtt caagtccctc tatcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.37e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
527 |
508 |
2.37e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.