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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MF563382.1 nt Coelachne africana voucher K:RCH09 ... 135161 bp Coelachne africana QL-PLN-00-007 618 bp View
MF765585.1 nt Utricularia laxa tRNA-Leu (trnL) ge... 905 bp Utricularia laxa QL-PLN-00-007 537 bp View
MF765599.1 nt Utricularia paulineae tRNA-Leu (trn... 929 bp Utricularia paulineae QL-PLN-00-007 559 bp View
MF784515.1 nt Gomphogyne cissiformis var. villosa... 156585 bp Gomphogyne cissiformis var. villosa QL-PLN-00-007 608 bp View
MF926116.1 nt Ardisia aberrans voucher Xia et al.... 912 bp Ardisia aberrans QL-PLN-00-007 583 bp View
MF926117.1 nt Ardisia affinis voucher Wang2007297... 911 bp Ardisia affinis QL-PLN-00-007 582 bp View
MF926118.1 nt Ardisia alyxiifolia voucher Wang200... 912 bp Ardisia alyxiifolia QL-PLN-00-007 583 bp View
MF926119.1 nt Ardisia argenticaulis voucher Wang2... 893 bp Ardisia argenticaulis QL-PLN-00-007 572 bp View
MF926120.1 nt Ardisia attenuata voucher Xia et al... 892 bp Ardisia attenuata QL-PLN-00-007 572 bp View
MF926121.1 nt Ardisia baotingensis voucher Wang20... 893 bp Ardisia baotingensis QL-PLN-00-007 572 bp View
MF926122.1 nt Ardisia brevicaulis voucher Wang200... 911 bp Ardisia brevicaulis QL-PLN-00-007 582 bp View
MF926123.1 nt Ardisia brunnescens voucher Wang200... 892 bp Ardisia brunnescens QL-PLN-00-007 572 bp View
MF926125.1 nt Ardisia chinensis voucher Wang20071... 902 bp Ardisia chinensis QL-PLN-00-007 572 bp View
MF926126.1 nt Ardisia conspersa voucher Wang20072... 911 bp Ardisia conspersa QL-PLN-00-007 582 bp View
MF926128.1 nt Ardisia crenata voucher Wang2007299... 898 bp Ardisia crenata QL-PLN-00-007 572 bp View
MF926130.1 nt Ardisia dasyrhizomatica voucher Wan... 896 bp Ardisia dasyrhizomatica QL-PLN-00-007 567 bp View
MF926131.1 nt Ardisia densilepidotula voucher Wan... 901 bp Ardisia densilepidotula QL-PLN-00-007 572 bp View
MF926133.1 nt Ardisia elliptica voucher Wang20073... 892 bp Ardisia elliptica QL-PLN-00-007 572 bp View
MF926135.1 nt Ardisia filiformis voucher Wang2007... 901 bp Ardisia filiformis QL-PLN-00-007 572 bp View
MF926136.1 nt Ardisia fordii voucher Wang200845 t... 895 bp Ardisia fordii QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.