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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MF101216.1 nt Caulokaempferia limiana isolate BMP... 993 bp Monolophus limianus QL-PLN-00-007 609 bp View
MF101217.1 nt Caulokaempferia saxicola isolate BM... 1000 bp Monolophus saxicola QL-PLN-00-007 608 bp View
MF101218.1 nt Pyrgophyllum yunnanense isolate BMP... 978 bp Pyrgophyllum yunnanense QL-PLN-00-007 609 bp View
MF101229.1 nt Afgekia mahidolae tRNA-Leu (trnL) g... 1059 bp Afgekia mahidolae QL-PLN-00-007 592 bp View
MF101230.1 nt Musa velutina isolate SS&JS 168 Run... 990 bp Musa velutina QL-PLN-00-007 594 bp View
MF170217.1 nt Schizachyrium scoparium chloroplast... 139296 bp Schizachyrium scoparium QL-PLN-00-007 525 bp View
MF177037.1 nt Chirita brachytricha var. magnibrac... 153723 bp Primulina brachytricha var. magnibracteata QL-PLN-00-007 550 bp View
MF287373.1 nt Pogostemon cablin isolate Hainan ch... 152462 bp Pogostemon cablin QL-PLN-00-007 561 bp View
MF288575.1 nt Diospyros sp. 'deyangshi' chloropla... 157934 bp Diospyros sp. 'deyangshi' QL-PLN-00-007 586 bp View
MF401450.1 nt Oryza eichingeri chloroplast, compl... 134817 bp Oryza eichingeri QL-PLN-00-007 615 bp View
MF401451.1 nt Oryza latifolia chloroplast, comple... 135191 bp Oryza latifolia QL-PLN-00-007 615 bp View
MF401452.1 nt Oryza rhizomatis chloroplast, compl... 134748 bp Oryza rhizomatis QL-PLN-00-007 615 bp View
MF401453.1 nt Oryza meyeriana chloroplast, comple... 135241 bp Oryza meyeriana QL-PLN-00-007 615 bp View
MF405486.1 nt Poa glauca voucher Alt 11-110 tRNA-... 987 bp Poa glauca QL-PLN-00-007 611 bp View
MF405487.1 nt Poa maroccana voucher R 77 tRNA-Leu... 1018 bp Poa maroccana QL-PLN-00-007 616 bp View
MF431125.1 nt Saccharum barberi isolate Chunnee t... 526 bp Saccharum barberi QL-PLN-00-007 526 bp View
MF431126.1 nt Saccharum spontaneum isolate Dacca ... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431127.1 nt Saccharum officinarum isolate EK02 ... 526 bp Saccharum officinarum QL-PLN-00-007 526 bp View
MF431128.1 nt Saccharum officinarum isolate Fiji2... 526 bp Saccharum officinarum QL-PLN-00-007 526 bp View
MF431129.1 nt Saccharum hybrid cultivar isolate G... 526 bp Saccharum hybrid cultivar QL-PLN-00-007 526 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.