Match details
Record ID: |
MF177037.1 |
Database: |
nt |
Go to original record |
Description: |
Chirita brachytricha var. magnibracteata voucher CBRAM20170516 chloroplast, complete genome. |
Taxon: |
Primulina brachytricha var. magnibracteata |
Original size: |
153723 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47984 |
48533 |
+ |
550 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgaagacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa gggttcagag
151 agcgaaaaag aggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttgac cgcgttggta gaagaattga aacttcagaa aggatgaagg
251 ataaacgtat ctattgaata ctattgatga ttaataatgg cccgaatctc
301 tatctgggtt tttgtatatg aaaaatagaa gaattggtgt gaattgattt
351 cacattgata aaagaatcga atatttatta atcaaatcat tcactccaca
401 gtccgataga tctcttaaag aacttattat tcggacgaga ataaagatag
451 agtcccgttc tacatgtcaa taccggcaac aatgaaactt atagtaagag
501 gaaaatccgt cgactttaaa aatcgtgagg gttcaagtcc ctctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.47e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
550 |
531 |
2.47e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.