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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KX572960.1 nt Ficus carica isolate MHG tRNA-Leu (... 1037 bp Ficus carica QL-PLN-00-007 581 bp View
KX572961.1 nt Ficus erecta isolate CSG tRNA-Leu (... 1037 bp Ficus erecta QL-PLN-00-007 581 bp View
KX572963.1 nt Maclura tricuspidata isolate GJB tR... 1050 bp Maclura tricuspidata QL-PLN-00-007 575 bp View
KX611154.1 nt Rhodiola rosea cultivar Inishmore t... 944 bp Rhodiola rosea QL-PLN-00-007 585 bp View
KX752084.1 nt Alloteropsis semialata isolate 3968... 139647 bp Alloteropsis semialata QL-PLN-00-007 609 bp View
KX752086.1 nt Alloteropsis semialata isolate Asem... 139660 bp Alloteropsis semialata QL-PLN-00-007 610 bp View
KX752088.1 nt Alloteropsis semialata isolate Asem... 139650 bp Alloteropsis semialata QL-PLN-00-007 610 bp View
KX752090.1 nt Alloteropsis angusta isolate Asem1 ... 140206 bp Alloteropsis angusta QL-PLN-00-007 613 bp View
KX756179.1 nt Cenchrus americanus chloroplast, co... 138172 bp Cenchrus americanus QL-PLN-00-007 613 bp View
KX792500.2 nt Nassella trichotoma chloroplast, co... 137568 bp Nassella trichotoma QL-PLN-00-007 598 bp View
KX852298.1 nt Gynostemma pentaphyllum chloroplast... 158004 bp Gynostemma pentaphyllum QL-PLN-00-007 609 bp View
KX870854.1 nt Echinochloa colona isolate QBG41 ch... 139718 bp Echinochloa colona QL-PLN-00-007 621 bp View
KX872854.1 nt Pseudobromus africanus voucher NMNH... 1000 bp Pseudobromus africanus QL-PLN-00-007 618 bp View
KX872894.1 nt Vahlodea atropurpurea voucher CMN:5... 1010 bp Vahlodea atropurpurea QL-PLN-00-007 618 bp View
KX984959.1 nt Taraxacum coreanum var. flavescens ... 935 bp Taraxacum coreanum var. flavescens QL-PLN-00-007 521 bp View
KX984962.1 nt Taraxacum officinale isolate Kor-Je... 910 bp Taraxacum officinale QL-PLN-00-007 527 bp View
KX984963.1 nt Taraxacum officinale isolate Kor-Da... 910 bp Taraxacum officinale QL-PLN-00-007 527 bp View
KX984964.1 nt Taraxacum officinale isolate Kor-Su... 910 bp Taraxacum officinale QL-PLN-00-007 527 bp View
KX984965.1 nt Taraxacum officinale isolate Kor-Su... 910 bp Taraxacum officinale QL-PLN-00-007 527 bp View
KX984967.1 nt Taraxacum officinale isolate Kor-Su... 910 bp Taraxacum officinale QL-PLN-00-007 527 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.