Match details
Record ID: |
KX752088.1 |
Database: |
nt |
Go to original record |
Description: |
Alloteropsis semialata isolate Asem4 chloroplast, complete genome. |
Taxon: |
Alloteropsis semialata |
Original size: |
139650 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48386 |
48995 |
+ |
610 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaataagt ggttgtcaaa
151 ctaaaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaattac gttgtgttgg tagtgtaact ccctggaaat
251 tagagaaaga agggcacatc taatacacac gtatagatac tgacatagca
301 aacgattaat cacggaaccc atatcctaat ataggttctt tttttttatt
351 ttttagaatg aaattaggaa tgattatgaa atagaaaatt ctgaattttt
401 ttagaattat tgtgaatcca ttccaatcga atattgagta atcaaatcct
451 tcaattcatt gttttcgaga tctttaaaaa agtggattaa tcgaacgagg
501 ataaagagag agtcccattc tacatgtcaa tactgacaac aatgaaattt
551 ctagtaaaag gaaaatccgt cgactttata agtcgtgagg gttcaagtcc
601 ctctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.75e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
610 |
591 |
2.75e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.