Match details
Record ID: |
KX872854.1 |
Database: |
nt |
Go to original record |
Description: |
Pseudobromus africanus voucher NMNH:2014104 (H.G. Schweickerdt 6053) tRNA-Leu (trnL-CAA) gene, partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF-GAA) gene, partial sequence; chloroplast. |
Taxon: |
Pseudobromus africanus |
Original size: |
1000 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
618 |
+ |
618 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagg aggttctcga
151 actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tccttctaaa
251 tttgagaaag aagggcttta tacatctaat aaacacgtat agatactggc
301 atagcaaacg attaatcatg gaacccatat tataatatag gttctttatt
351 cttttttaga atgcaatttg aaatagaaat gattatgaaa tcaaaaattc
401 tgaatttttt tggaattatt gtgaatccat tccaattgaa tattttgtaa
451 tcaaatcctt caattcaaag ttttgaggtc tttaaaaaag tggattaatc
501 ggacgaggac aaagagagag tcccattcta catgtcaata ctgacaacaa
551 tgaaatttct agtaaaagga aaatccgtcg actttataag tcgtgagggt
601 tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
618 |
599 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.