Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:
Mismatches:
* required field


Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KR364802.1 nt Oryza glumipatula cultivar W1187 ch... 134401 bp Oryza glumipatula QL-PLN-00-007 615 bp View
KR364803.1 nt Oryza glumipatula cultivar W2201 ch... 134575 bp Oryza glumipatula QL-PLN-00-007 615 bp View
KR703926.1 nt Streptocarpus brevipilosus voucher ... 916 bp Streptocarpus brevipilosus QL-PLN-00-007 545 bp View
KR703935.1 nt Streptocarpus ionanthus subsp. grot... 916 bp Streptocarpus ionanthus subsp. grotei QL-PLN-00-007 541 bp View
KR703939.1 nt Streptocarpus ionanthus subsp. rupi... 916 bp Streptocarpus ionanthus subsp. rupicola QL-PLN-00-007 541 bp View
KR703948.1 nt Streptocarpus bindseili voucher ex ... 912 bp Streptocarpus bindseili QL-PLN-00-007 537 bp View
KR703953.1 nt Streptocarpus capuronii voucher Moe... 912 bp Streptocarpus capuronii QL-PLN-00-007 537 bp View
KR703966.1 nt Streptocarpus exsertus voucher Bell... 887 bp Streptocarpus exsertus QL-PLN-00-007 544 bp View
KR703969.1 nt Streptocarpus fanniniae voucher Dal... 912 bp Streptocarpus fanniniae QL-PLN-00-007 537 bp View
KR704003.1 nt Streptocarpus parviflorus voucher L... 912 bp Streptocarpus parviflorus QL-PLN-00-007 537 bp View
KR704008.1 nt Streptocarpus porphyrostachys vouch... 912 bp Streptocarpus porphyrostachys QL-PLN-00-007 537 bp View
KR704019.1 nt Streptocarpus saxorum voucher Mathe... 903 bp Streptocarpus saxorum QL-PLN-00-007 536 bp View
KR704020.1 nt Streptocarpus schliebenii voucher B... 948 bp Streptocarpus schliebenii QL-PLN-00-007 573 bp View
KR704025.1 nt Streptocarpus tanala voucher Moelle... 917 bp Streptocarpus tanala QL-PLN-00-007 545 bp View
KR704029.1 nt Streptocarpus thysanotus voucher ex... 922 bp Streptocarpus thysanotus QL-PLN-00-007 545 bp View
KR704031.1 nt Streptocarpus variabilis voucher Po... 912 bp Streptocarpus variabilis QL-PLN-00-007 537 bp View
KR704036.1 nt Streptocarpus wittei voucher La Cro... 912 bp Streptocarpus wittei QL-PLN-00-007 537 bp View
KR822685.1 nt Echinochloa crus-galli var. crus-ga... 139860 bp Echinochloa crus-galli var. crus-galli QL-PLN-00-007 621 bp View
KR822686.1 nt Echinochloa crus-galli var. pratico... 139846 bp Echinochloa crus-galli var. praticola QL-PLN-00-007 621 bp View
KR873422.1 nt Zea mays subsp. huehuetenangensis p... 140453 bp Zea mays subsp. huehuetenangensis QL-PLN-00-007 532 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.