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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KC539177.1 nt Solanum multispinum isolate LB3344 ... 1746 bp Solanum multispinum QL-PLN-00-007 557 bp View
KC539178.1 nt Solanum pumilum isolate LB3338 tRNA... 1726 bp Solanum pumilum QL-PLN-00-007 573 bp View
KC539179.1 nt Solanum pumilum isolate LB3339 tRNA... 1755 bp Solanum pumilum QL-PLN-00-007 573 bp View
KC539181.1 nt Solanum comptum isolate LB2364 tRNA... 1763 bp Solanum comptum QL-PLN-00-007 577 bp View
KC569603.1 nt Sesamum indicum chloroplast, comple... 153338 bp Sesamum indicum QL-PLN-00-007 562 bp View
KC713822.1 nt Fritillaria taipaiensis isolate wx2... 151682 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
KC713823.1 nt Fritillaria taipaiensis isolate wx3... 151691 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
KC968977.1 nt Lilium longiflorum chloroplast, com... 152793 bp Lilium longiflorum QL-PLN-00-007 607 bp View
KC989616.1 nt Phragmites australis trnT-trnL inte... 1188 bp Phragmites australis QL-PLN-00-007 617 bp View
KF241980.1 nt Zea mays subsp. mays cultivar A188 ... 140437 bp Zea mays subsp. mays QL-PLN-00-007 532 bp View
KF241981.1 nt Zea mays subsp. mays cultivar B73 c... 140447 bp Zea mays subsp. mays QL-PLN-00-007 532 bp View
KF269071.1 nt Prostanthera densa voucher Wilson 1... 1481 bp Prostanthera densa QL-PLN-00-007 571 bp View
KF269072.1 nt Prostanthera densa voucher Henwood ... 1410 bp Prostanthera densa QL-PLN-00-007 569 bp View
KF269073.1 nt Prostanthera densa voucher Wilson 1... 1523 bp Prostanthera densa QL-PLN-00-007 569 bp View
KF269074.1 nt Prostanthera densa voucher Wilson 1... 1525 bp Prostanthera densa QL-PLN-00-007 571 bp View
KF359901.1 nt Oryza nivara chloroplast, complete ... 134785 bp Oryza nivara QL-PLN-00-007 615 bp View
KF359902.1 nt Oryza rufipogon chloroplast, comple... 134587 bp Oryza rufipogon QL-PLN-00-007 615 bp View
KF359903.1 nt Oryza glaberrima chloroplast, compl... 134661 bp Oryza glaberrima QL-PLN-00-007 615 bp View
KF359904.1 nt Oryza barthii chloroplast, complete... 134581 bp Oryza barthii QL-PLN-00-007 615 bp View
KF359905.1 nt Oryza glumipatula chloroplast, comp... 135224 bp Oryza glumipatula QL-PLN-00-007 614 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.