Match details
Record ID: |
KC968977.1 |
Database: |
nt |
Go to original record |
Description: |
Lilium longiflorum chloroplast, complete genome. |
Taxon: |
Lilium longiflorum |
Original size: |
152793 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
45151 |
45757 |
+ |
607 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc tttattttga gaaaaagggt ttaatttata
151 gtttttataa tataaaacta caataaaaaa aagataggtg cagagactca
201 atggaagctg ttctaacgaa tgaagttgat tacgttgcgc tggtagccgg
251 aattcttcta tcaaaatgac agagaggatg cccgccctat atacgtatat
301 atacatactg acatagtaaa cgattgatta atcgcggccc gaatccatta
351 taatatatat atatgaaaaa tttaagagtt attgtaaatc tattccatat
401 tccaatcaaa gtttaaggaa gaatcgaata ttcagtgatc aaattattca
451 ttccagagtc tgtatagatc ttttaaaaac tgattattcg gacgagaata
501 aagagagagt cccattctac gtgtcaatac cgacaacaat gaaatttata
551 gtaaaaggaa aatccgtcga ctttataagt cgtgagggtt caagtccctc
601 tatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.73e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
607 |
588 |
2.73e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.