Match details
Record ID: |
KF269074.1 |
Database: |
nt |
Go to original record |
Description: |
Prostanthera densa voucher Wilson 173 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (tRNA-Leu) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence. |
Taxon: |
Prostanthera densa |
Original size: |
1525 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
671 |
1241 |
+ |
571 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaacaaa
101 aatgggtaat cctgagccaa atcccgtttt tctcaaaaca aaggtaaagg
151 ttcaaaaaac gaaaaaaaaa aggataggtg cagagactca atggaagctg
201 ttctaacaaa tggagttgac tgccctgata gaggcatctt tgcatggaaa
251 cttccgaaag gatgaaggat aaatgtatct attgaatact atatcaaatg
301 attaatgatg gtccgaatct gtatttgtat tttttaatat gaaaaatgga
351 agaattggtg tgaattgatt ccacattgaa gaaaaaatcg aatattcagt
401 cagcaaatga ttcactccat agtccgatag atcttttaaa gaactgatta
451 atcggacgag aataaagata gagtcccatt ctacatgtca ataccggcaa
501 caatgaaatt tatagtaaga ggaaaatccg tcgactttaa aaatcgtgag
551 ggttcaagtc cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
571 |
552 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.