Match details
Record ID: |
KF269073.1 |
Database: |
nt |
Go to original record |
Description: |
Prostanthera densa voucher Wilson 176 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (tRNA-Leu) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence. |
Taxon: |
Prostanthera densa |
Original size: |
1523 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
671 |
1239 |
+ |
569 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt naaattcaga gaanccccgg aattaacaaa
101 aakggtaatc ctgagccaaa tcccgtttyn tcaaaacaaa ggtaaaggtt
151 caaaaaacga aaaaaaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacaaatg gagttgactg ccctgataga ggcatctttg catggaaact
251 tccgaaagga tgaaggataa atgtatctat tgaatactat atcaaatgat
301 taatgatggt ccgaatctgt atttgtattt tttaatatga aaaatggaag
351 aattggtgtg aattgattcc acattgaaga aaaaatcgaa tattcagtca
401 gcaaatgatt cactccatag tccgatagat cttttaaaga actgattaat
451 cggacgagaa taaagataga gtcccattct acatgtcaat accggcaaca
501 atgaaattta tagtaagagg aaaatccgtc gactttaaaa atcgtgaggg
551 ttcaagtccc tctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
569 |
550 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.