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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JF697582.1 nt Opithandra burttii isolate KN06 tRN... 948 bp Oreocharis burttii QL-PLN-00-007 555 bp View
JF697586.1 nt Oreocharis henryana isolate KN14 tR... 941 bp Oreocharis henryana QL-PLN-00-007 550 bp View
JF791675.1 nt Bouteloua chondrosioides voucher RS... 1327 bp Bouteloua chondrosioides QL-PLN-00-007 571 bp View
JF796858.1 nt Cypripedium passerinum isolate C006... 624 bp Cypripedium passerinum QL-PLN-00-007 606 bp View
JF796859.1 nt Cypripedium reginae isolate C007 tR... 626 bp Cypripedium reginae QL-PLN-00-007 608 bp View
JF904750.1 nt Dielsiochloa floribunda voucher Pet... 1827 bp Festuca floribunda QL-PLN-00-007 610 bp View
JF904753.1 nt Puccinellia frigida voucher Peterso... 1725 bp Puccinellia frigida QL-PLN-00-007 617 bp View
JF904754.1 nt Puccinellia frigida voucher Peterso... 1683 bp Puccinellia frigida QL-PLN-00-007 579 bp View
JF904755.1 nt Alopecurus hitchcockii voucher Pete... 1757 bp Alopecurus hitchcockii QL-PLN-00-007 565 bp View
JF904756.1 nt Poa annua voucher Peterson 18256 (R... 1760 bp Poa annua QL-PLN-00-007 616 bp View
JF904760.1 nt Poa chapmaniana voucher Radford 447... 1441 bp Poa chapmaniana QL-PLN-00-007 616 bp View
JF904763.1 nt Poa atropidiformis voucher Peterson... 1815 bp Poa atropidiformis QL-PLN-00-007 618 bp View
JF904765.1 nt Poa arcuata voucher Peterson 16564 ... 1801 bp Poa arcuata QL-PLN-00-007 613 bp View
JF904767.1 nt Poa parvifolia voucher Peterson 181... 1806 bp Poa parvifolia QL-PLN-00-007 618 bp View
JF904771.1 nt Poa congesta voucher Peterson 16663... 1807 bp Poa congesta QL-PLN-00-007 618 bp View
JF904772.1 nt Poa congesta voucher Peterson 18172... 1802 bp Poa congesta QL-PLN-00-007 618 bp View
JF904776.1 nt Poa macusaniensis voucher Peterson ... 1821 bp Poa macusaniensis QL-PLN-00-007 618 bp View
JF904780.1 nt Poa amplivaginata voucher Peterson ... 1815 bp Poa amplivaginata QL-PLN-00-007 618 bp View
JF904789.1 nt Poa occidentalis voucher Soreng 403... 1821 bp Poa occidentalis QL-PLN-00-007 618 bp View
JF922130.1 nt Cedrela fissilis isolate ESVNI36 tr... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.