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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HM164341.1 nt Wendlandia arabica voucher Thulin e... 1192 bp Wendlandia arabica QL-PLN-00-007 566 bp View
HM164342.1 nt Wendlandia formosana voucher Chung ... 1761 bp Wendlandia formosana QL-PLN-00-007 566 bp View
HM164344.1 nt Wendlandia paniculata voucher Ridsd... 1640 bp Wendlandia paniculata QL-PLN-00-007 566 bp View
HM369421.1 nt Loropetalum chinense isolate L-Hap_... 588 bp Loropetalum chinense QL-PLN-00-007 588 bp View
HM369427.1 nt Loropetalum chinense isolate L-Hap_... 588 bp Loropetalum chinense QL-PLN-00-007 588 bp View
HM369439.1 nt Loropetalum subcordatum isolate L-H... 588 bp Loropetalum subcordatum QL-PLN-00-007 588 bp View
HM536231.1 nt Jackiopsis ornata isolate cA047 trn... 1604 bp Jackiopsis ornata QL-PLN-00-007 565 bp View
HM536232.1 nt Jackiopsis ornata isolate cA048 trn... 1570 bp Jackiopsis ornata QL-PLN-00-007 565 bp View
HM536233.1 nt Jackiopsis ornata isolate cA049 trn... 1609 bp Jackiopsis ornata QL-PLN-00-007 565 bp View
HM536234.1 nt Glionnetia sericea isolate cA098 tR... 1685 bp Glionnetia sericea QL-PLN-00-007 558 bp View
HM536235.1 nt Glionnetia sericea isolate cA099 tR... 1713 bp Glionnetia sericea QL-PLN-00-007 558 bp View
HM536236.1 nt Glionnetia sericea isolate cA100 tR... 1162 bp Glionnetia sericea QL-PLN-00-007 558 bp View
HM536959.1 nt Smilax china plastid, complete genome. 157878 bp Smilax china QL-PLN-00-007 615 bp View
HQ721898.1 nt Solanum agnewiorum isolate LB2883 t... 1686 bp Solanum agnewiorum QL-PLN-00-007 571 bp View
HQ721913.1 nt Solanum coagulans isolate LB2733 tr... 1647 bp Solanum coagulans QL-PLN-00-007 563 bp View
HQ721915.1 nt Solanum croatii isolate LB2536 trnT... 1468 bp Solanum croatii QL-PLN-00-007 571 bp View
HQ721921.1 nt Solanum flagelliferum isolate LB253... 1498 bp Solanum flagelliferum QL-PLN-00-007 571 bp View
HQ721930.1 nt Solanum melongena isolate LB2595 tr... 1642 bp Solanum melongena QL-PLN-00-007 571 bp View
HQ731441.1 nt Panicum virgatum cultivar Kanlow ch... 139677 bp Panicum virgatum QL-PLN-00-007 565 bp View
HV929201.1 emblrelpat JP 2010523076-A/9: ASSAYS FOR FUNGA... 640 bp Zea mays QL-PLN-00-007 532 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.