Match details
Record ID: |
HM369427.1 |
Database: |
nt |
Go to original record |
Description: |
Loropetalum chinense isolate L-Hap_7 tRNA-Leu (trnL) gene, partial sequence; chloroplast. |
Taxon: |
Loropetalum chinense |
Original size: |
588 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
588 |
+ |
588 bp |
|
1 cgaaatcggt agacgctacg gacttaattt gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaag
101 gggcaatcct gagccaaatc ctgttttccg aaaacaaaga caagggttcc
151 gaaagcgaga atcaaaataa aaaaaggata ggtgcagaga ctcaatggaa
201 gctgttctaa caaatggagt tgactgcgtt acgttggtaa aggaatcttt
251 ttatggaaac tccagaaagg atgaaggata aacctatata catacgtata
301 cgtactaaaa tactatatca actgattaag gacgattcga atctgtattt
351 tttatatgaa aaatgaaaaa attgttgtga atcgattcca agttgaagaa
401 agaatcaaat attcattgat aaaataattc actccatggt ctgatagatc
451 ttttgaagat ctgattaatc ggacgagaat aaagatagag tcccattcta
501 catgtcaatg ccgacaacaa tgaaatttat agtaagagga aaatccgtcg
551 actttagaaa tcgtgagggt tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.65e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
588 |
569 |
2.65e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.