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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HM164308.1 nt Atractocarpus balansaeanus voucher ... 1692 bp Atractocarpus balansaeanus QL-PLN-00-007 573 bp View
HM164309.1 nt Augusta longifolia voucher Kirkbrid... 1481 bp Augusta longifolia QL-PLN-00-007 567 bp View
HM164310.1 nt Bertiera aethiopica voucher Dessein... 1716 bp Bertiera aethiopica QL-PLN-00-007 565 bp View
HM164311.1 nt Bertiera longithyrsa voucher Karehe... 1715 bp Bertiera longithyrsa QL-PLN-00-007 569 bp View
HM164312.1 nt Boholia nematostylis voucher Bickne... 1810 bp Boholia nematostylis QL-PLN-00-007 569 bp View
HM164314.1 nt Burchellia bubalina voucher Bremer ... 1181 bp Burchellia bubalina QL-PLN-00-007 566 bp View
HM164315.1 nt Catunaregam spinosa voucher Q. Luke... 1723 bp Catunaregam spinosa QL-PLN-00-007 567 bp View
HM164318.1 nt Coffea sessiliflora voucher Luke 90... 1756 bp Coffea sessiliflora QL-PLN-00-007 570 bp View
HM164319.1 nt Coptosperma supra-axillare voucher ... 1686 bp Coptosperma supra-axillare QL-PLN-00-007 567 bp View
HM164320.1 nt Duperrea pavettifolia voucher cult.... 1781 bp Duperrea pavettifolia QL-PLN-00-007 567 bp View
HM164322.1 nt Genipa americana voucher Kiehn, HBV... 1749 bp Genipa americana QL-PLN-00-007 567 bp View
HM164326.1 nt Hyperacanthus grevei voucher Razafi... 1580 bp Hyperacanthus grevei QL-PLN-00-007 567 bp View
HM164327.1 nt Kailarsenia tentaculata voucher Lar... 1482 bp Kailarsenia tentaculata QL-PLN-00-007 574 bp View
HM164329.1 nt Mitriostigma axillare voucher Breme... 1214 bp Mitriostigma axillare QL-PLN-00-007 569 bp View
HM164331.1 nt Pavetta indica voucher Andreasen 20... 1659 bp Pavetta indica QL-PLN-00-007 567 bp View
HM164333.1 nt Psilanthus ebracteolatus voucher An... 1656 bp Coffea ebracteolata QL-PLN-00-007 571 bp View
HM164334.1 nt Randia aculeata voucher F.G.x.1-145... 1712 bp Randia aculeata QL-PLN-00-007 567 bp View
HM164338.1 nt Trailliaedoxa gracilis voucher Yu 1... 1674 bp Trailliaedoxa gracilis QL-PLN-00-007 565 bp View
HM164339.1 nt Trailliaedoxa gracilis voucher Bouf... 1701 bp Trailliaedoxa gracilis QL-PLN-00-007 565 bp View
HM164340.1 nt Tricalysia sonderiana voucher Breme... 1716 bp Empogona coriacea QL-PLN-00-007 564 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.