Match details
Record ID: |
HM164339.1 |
Database: |
nt |
Go to original record |
Description: |
Trailliaedoxa gracilis voucher Boufford & al 35041 (MO) tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Trailliaedoxa gracilis |
Original size: |
1701 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
796 |
1360 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaag ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttgact gcgttagtat agaaatcttt tcatcgaaaa ttccgaaagg
251 ataaagtcaa agataaacgt atatacatat tgaatactat atcaaatgat
301 taatgacgac tcgactgaat ctgtattttt tatatgaaaa cggaagaatt
351 ggtgtgaata aattccacat tgaagaaaga atcgaatatt cattgattac
401 atgattcact ccacagtntg atatattttt tcaagaattt attaatcgga
451 cgagaataaa gatagagtcc cgttctacat gtcaatgtcg gcaacaatga
501 aatttatagt aagaggaaaa tccgtcgact tttaaaatcg tgagggttca
551 agtccctcta tcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.