Match details
Record ID: |
HM164327.1 |
Database: |
nt |
Go to original record |
Description: |
Kailarsenia tentaculata voucher Larsen 41627 (AAU) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Kailarsenia tentaculata |
Original size: |
1482 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
736 |
1309 |
+ |
574 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat tctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaaa ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251 ataaagtata aagtgaagga taaacgtata tatacgtatt gaatactata
301 tcaaatgatt aatgacgact cgactgaatc tgtatttttt atatgaaaac
351 ggaagaattg gtgtgaatag attccacatt gaagaaagaa tcgaatattc
401 attgatcaaa tgattcactc catagtctga tagatctttt caagaattga
451 ttaatcggac gagaataaag atagagtccc gttctacatg tcaatgtcgg
501 caacaatgaa atttatagta agaggaaaat ccgtcgactt taaaaatcgt
551 gagggttcaa gtccctctat cccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.58e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
574 |
555 |
2.58e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.