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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FJ801152.1 nt Lysiphyllum winitii voucher 2125 (K... 1025 bp Lysiphyllum winitii QL-PLN-00-007 598 bp View
FJ801154.1 nt Bauhinia weberbaueri voucher Klitga... 1085 bp Bauhinia weberbaueri QL-PLN-00-007 602 bp View
FJ801155.1 nt Bauhinia weberbaueri voucher Klitga... 1084 bp Bauhinia weberbaueri QL-PLN-00-007 602 bp View
FJ801156.1 nt Cercis occidentalis voucher Wojciec... 1068 bp Cercis occidentalis QL-PLN-00-007 593 bp View
FJ801157.1 nt Adenolobus garipensis voucher Leist... 780 bp Adenolobus garipensis QL-PLN-00-007 605 bp View
FJ801158.1 nt Adenolobus pechuelii voucher Oliver... 1058 bp Adenolobus pechuelii QL-PLN-00-007 598 bp View
FJ801161.1 nt Bauhinia hildebrandtii voucher Brun... 1050 bp Bauhinia hildebrandtii QL-PLN-00-007 593 bp View
FJ801164.1 nt Cercis gigantea voucher Herendeen 1... 1067 bp Cercis gigantea (nom. inval.) QL-PLN-00-007 592 bp View
FJ867528.1 nt Glandularia fasciculata trnT-trnL i... 1585 bp Junellia fasciculata QL-PLN-00-007 553 bp View
FM179540.1 nt Bixa orellana chloroplast tRNA-Leu ... 954 bp Bixa orellana QL-PLN-00-007 613 bp View
FM207109.1 nt Alberta humblotii chloroplast trnT-... 1212 bp Razafimandimbisonia humblotii QL-PLN-00-007 559 bp View
FM207110.1 nt Alberta magna chloroplast trnT-trnL... 1594 bp Alberta magna QL-PLN-00-007 567 bp View
FM207111.1 nt Alberta sp. Eriksson et al. 904 chl... 1646 bp Razafimandimbisonia sp. 2 Eriksson et al. 904 QL-PLN-00-007 559 bp View
FM207112.1 nt Alberta minor chloroplast trnT-trnL... 1686 bp Razafimandimbisonia minor QL-PLN-00-007 559 bp View
FM207113.1 nt Alberta minor chloroplast trnT-trnL... 1630 bp Razafimandimbisonia minor QL-PLN-00-007 559 bp View
FM207114.1 nt Alberta sambiranensis chloroplast t... 1705 bp Razafimandimbisonia sambiranensis QL-PLN-00-007 559 bp View
FM207115.1 nt Alberta sp. Eriksson et al. 928 chl... 1700 bp Razafimandimbisonia sp. 1 Eriksson et al. 928 QL-PLN-00-007 559 bp View
FM207116.1 nt Alberta sambiranensis chloroplast t... 1701 bp Razafimandimbisonia sambiranensis QL-PLN-00-007 559 bp View
FM207117.1 nt Alberta cf. humblotii Eriksson et a... 1651 bp Razafimandimbisonia cf. humblotii Eriksson et al. 1027 QL-PLN-00-007 559 bp View
FM207118.1 nt Augusta rivalis chloroplast tRNA-Th... 1748 bp Augusta rivalis QL-PLN-00-007 563 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.