European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU828162.1 nt Agalinis homalantha isolate 1TX tRN... 1656 bp Agalinis homalantha QL-PLN-00-007 553 bp View
EU828163.1 nt Agalinis homalantha isolate 2TX tRN... 1631 bp Agalinis homalantha QL-PLN-00-007 553 bp View
EU828164.1 nt Agalinis laxa isolate 3SC tRNA-Thr ... 1657 bp Agalinis laxa QL-PLN-00-007 553 bp View
EU828165.1 nt Agalinis laxa isolate 4GA tRNA-Thr ... 1617 bp Agalinis laxa QL-PLN-00-007 553 bp View
EU828166.1 nt Agalinis linifolia isolate 2FL tRNA... 1634 bp Agalinis linifolia QL-PLN-00-007 553 bp View
EU828168.1 nt Agalinis maritima isolate 2MA tRNA-... 1662 bp Agalinis maritima QL-PLN-00-007 553 bp View
EU828169.1 nt Agalinis navasotensis isolate 1TX t... 1578 bp Agalinis navasotensis QL-PLN-00-007 553 bp View
EU828170.1 nt Agalinis navasotensis isolate 5TX t... 1638 bp Agalinis navasotensis QL-PLN-00-007 553 bp View
EU828171.1 nt Agalinis obtusifolia isolate 13AL t... 1654 bp Agalinis obtusifolia QL-PLN-00-007 558 bp View
EU828172.1 nt Agalinis obtusifolia isolate 14AL t... 1643 bp Agalinis obtusifolia QL-PLN-00-007 558 bp View
EU828173.1 nt Agalinis tenella isolate 1FL tRNA-T... 1672 bp Agalinis tenella QL-PLN-00-007 552 bp View
EU828174.1 nt Agalinis obtusifolia isolate 20FL t... 1653 bp Agalinis obtusifolia QL-PLN-00-007 558 bp View
EU828175.1 nt Agalinis obtusifolia isolate 6AL tR... 1671 bp Agalinis obtusifolia QL-PLN-00-007 558 bp View
EU828176.1 nt Agalinis obtusifolia isolate 8AL tR... 1600 bp Agalinis obtusifolia QL-PLN-00-007 558 bp View
EU828177.1 nt Agalinis oligophylla isolate 12AL t... 1641 bp Agalinis oligophylla QL-PLN-00-007 553 bp View
EU828178.1 nt Agalinis oligophylla isolate 1AL tR... 1660 bp Agalinis oligophylla QL-PLN-00-007 553 bp View
EU828179.1 nt Agalinis oligophylla isolate 5LAg t... 1601 bp Agalinis oligophylla QL-PLN-00-007 553 bp View
EU828180.1 nt Agalinis oligophylla isolate 8TX tR... 1637 bp Agalinis oligophylla QL-PLN-00-007 553 bp View
EU828181.1 nt Agalinis paupercula isolate 4MA tRN... 1628 bp Agalinis paupercula QL-PLN-00-007 540 bp View
EU828182.1 nt Agalinis paupercula isolate 7NY tRN... 1620 bp Agalinis paupercula QL-PLN-00-007 539 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.