Match details
Record ID: |
EU828174.1 |
Database: |
nt |
Go to original record |
Description: |
Agalinis obtusifolia isolate 20FL tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Agalinis obtusifolia |
Original size: |
1653 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
725 |
1282 |
+ |
558 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101 aaagggcaat cctgagccaa atcctctttt cttaaaacaa aagttcagaa
151 aacgaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttgat tgcgctgata gaggaatgaa acttcagaaa ggatgaagga
251 taaacgtatc tattgaatac tatatcaaaa tcaaatgatt gattaatgat
301 ggcccaaatc tctatctgta tttttgaata cgaaaagtgg aagaattggt
351 gtgaatttct tccctaaaga atattcattc atcaaatcat tcactccata
401 gtccggtccg atagatcttt tttaaaagat ctgattaatc ggacgagaat
451 aaagatagag tcccattcta catgtcaata ccggcaacaa tgaaatttat
501 agtaaaagga aaatccgtcg acttttaaaa tcgtgagggt tcaagtccct
551 ctatcccc
View other 7 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.51e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
558 |
539 |
2.51e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.