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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU145574.1 nt Dibrachionostylus kaessneri isolate... 1818 bp Dibrachionostylus kaessneri QL-PLN-00-007 583 bp View
EU191006.1 nt Ficus carica cultivar Hammouri tRNA... 589 bp Ficus carica QL-PLN-00-007 581 bp View
EU191009.1 nt Ficus carica cultivar Zaghoubi tRNA... 586 bp Ficus carica QL-PLN-00-007 581 bp View
EU191012.1 nt Ficus carica cultivar Tounsi tRNA-L... 586 bp Ficus carica QL-PLN-00-007 581 bp View
EU191014.1 nt Ficus carica cultivar Grichy tRNA-L... 588 bp Ficus carica QL-PLN-00-007 582 bp View
EU191015.1 nt Ficus carica cultivar Tayouri Assfa... 586 bp Ficus carica QL-PLN-00-007 581 bp View
EU191016.1 nt Ficus carica cultivar Hamri tRNA-Le... 583 bp Ficus carica QL-PLN-00-007 581 bp View
EU191020.1 nt Ficus carica cultivar Dchiche Assal... 586 bp Ficus carica QL-PLN-00-007 581 bp View
EU191022.1 nt Ficus carica cultivar Rogaby tRNA-L... 584 bp Ficus carica QL-PLN-00-007 581 bp View
EU191023.1 nt Ficus carica cultivar Sawoudi tRNA-... 588 bp Ficus carica QL-PLN-00-007 583 bp View
EU200168.1 nt Salvia brevilabra tRNA-Leu (trnL) g... 888 bp Salvia brevilabra QL-PLN-00-007 529 bp View
EU200170.1 nt Salvia cavaleriei var. simplicifoli... 889 bp Salvia cavaleriei var. simplicifolia QL-PLN-00-007 530 bp View
EU200171.1 nt Salvia cynica tRNA-Leu (trnL) gene ... 889 bp Salvia cynica QL-PLN-00-007 529 bp View
EU200172.1 nt Salvia evansiana tRNA-Leu (trnL) ge... 892 bp Salvia evansiana QL-PLN-00-007 529 bp View
EU200173.1 nt Salvia flava tRNA-Leu (trnL) gene a... 889 bp Salvia flava QL-PLN-00-007 529 bp View
EU200176.1 nt Salvia omeiana tRNA-Leu (trnL) gene... 889 bp Salvia omeiana QL-PLN-00-007 529 bp View
EU200177.1 nt Salvia przewalskii tRNA-Leu (trnL) ... 888 bp Salvia przewalskii QL-PLN-00-007 529 bp View
EU200178.1 nt Salvia roborowskii tRNA-Leu (trnL) ... 889 bp Salvia roborowskii QL-PLN-00-007 530 bp View
EU220730.1 nt Salvia tricuspis from China tRNA-Le... 890 bp Salvia tricuspis QL-PLN-00-007 530 bp View
EU220731.1 nt Salvia yunnanensis from China tRNA-... 890 bp Salvia yunnanensis QL-PLN-00-007 529 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.