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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EF571536.1 nt Glandularia dissecta voucher R. G. ... 1594 bp Glandularia dissecta QL-PLN-00-007 553 bp View
EF571538.1 nt Glandularia guaranitica voucher R. ... 1595 bp Glandularia guaranitica QL-PLN-00-007 553 bp View
EF571539.1 nt Glandularia subincana voucher R. G.... 1594 bp Glandularia subincana QL-PLN-00-007 553 bp View
EF571540.1 nt Glandularia gooddingii var. nepetif... 1558 bp [Verbena] gooddingii var. nepetifolia QL-PLN-00-007 553 bp View
EF571547.1 nt Glandularia gooddingii var. gooddin... 1593 bp Glandularia gooddingii var. gooddingii QL-PLN-00-007 553 bp View
EF571552.1 nt Glandularia microphylla voucher R. ... 1590 bp Glandularia microphylla QL-PLN-00-007 553 bp View
EF571554.1 nt Glandularia aurantiaca voucher R. G... 1589 bp Glandularia aurantiaca QL-PLN-00-007 553 bp View
EF571555.1 nt Glandularia araucana voucher R. G. ... 1591 bp Glandularia araucana QL-PLN-00-007 553 bp View
EF571556.1 nt Glandularia tenera voucher R. G. Ol... 1597 bp Glandularia tenera QL-PLN-00-007 553 bp View
EF571558.1 nt Glandularia crithmifolia voucher R.... 1588 bp Junellia crithmifolia QL-PLN-00-007 553 bp View
EF571559.1 nt Junellia connatibracteata voucher R... 1590 bp Junellia connatibracteata QL-PLN-00-007 553 bp View
EF571560.1 nt Junellia minima voucher R. G. Olmst... 1599 bp Junellia minima QL-PLN-00-007 553 bp View
EF571561.1 nt Junellia seriphioides voucher R. G.... 1601 bp Junellia seriphioides QL-PLN-00-007 553 bp View
EF571562.1 nt Junellia uniflora voucher R. G. Olm... 1593 bp Junellia uniflora QL-PLN-00-007 553 bp View
EF571563.1 nt Junellia juniperina voucher R. G. O... 1597 bp Junellia juniperina QL-PLN-00-007 553 bp View
EF571564.1 nt Junellia juniperina voucher R. G. O... 1599 bp Junellia juniperina QL-PLN-00-007 553 bp View
EF571565.1 nt Junellia spathulata voucher R. G. O... 1591 bp Junellia spathulata QL-PLN-00-007 553 bp View
EF571566.1 nt Junellia scoparia voucher R. G. Olm... 1611 bp Mulguraea scoparia QL-PLN-00-007 566 bp View
EF571568.1 nt Junellia aspera voucher R. G. Olmst... 1600 bp Mulguraea aspera QL-PLN-00-007 565 bp View
EF571569.1 nt Lippia salsa voucher R. G. Olmstead... 1636 bp Lippia salsa QL-PLN-00-007 570 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.