Match details
Record ID: |
EF571569.1 |
Database: |
nt |
Go to original record |
Description: |
Lippia salsa voucher R. G. Olmstead 2004-180 (WTU) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Lippia salsa |
Original size: |
1636 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
691 |
1260 |
+ |
570 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgccaaag gcggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttga ctgcgtgagg tagaggaatc tttccatcga aacttcagaa
251 aggatgaagg ataaacgtat ctattgaata ctctatcaaa atcaaatgat
301 taatgatggc ccgaatctgt atctgtattt tttttatatg aaaaatggaa
351 gaattggtgt gaattgattc cccattgaag aaagaatcaa atagtccttc
401 atcaaatgat tcactccaca gtccgataaa tcttttaaag aactcattaa
451 tcggacgaga ataaagatag agtcccattc tacatgtcaa tcccggcaac
501 aatgaaattt atagtaagag gaaaatccgt cgactttaaa aatcgtgagg
551 gttcaagtcc ctctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
570 |
551 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.