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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
EF440561.1 nt Picea purpurea from China tRNA-Thr ... 1434 bp Picea purpurea QL-PLN-00-007 562 bp View
EF440563.1 nt Picea rubens from USA tRNA-Thr (trn... 1434 bp Picea rubens QL-PLN-00-007 562 bp View
EF440564.1 nt Picea schrenkiana from China tRNA-T... 1423 bp Picea schrenkiana QL-PLN-00-007 556 bp View
EF440565.1 nt Picea sitchensis from USA tRNA-Thr ... 1435 bp Picea sitchensis QL-PLN-00-007 562 bp View
EF440566.1 nt Picea smithiana from Afghanistan tR... 1429 bp Picea smithiana QL-PLN-00-007 562 bp View
EF440567.1 nt Picea spinulosa from Bhutan tRNA-Th... 1429 bp Picea spinulosa QL-PLN-00-007 562 bp View
EF528487.1 nt Cryptandra ericoides voucher D.E.Al... 1004 bp Cryptandra ericoides QL-PLN-00-007 602 bp View
EF538134.1 nt Senecio saxatilis tRNA-Leu (trnL) g... 939 bp Senecio saxatilis QL-PLN-00-007 529 bp View
EF571519.1 nt Verbena rigida voucher R. G. Olmste... 1592 bp Verbena rigida QL-PLN-00-007 553 bp View
EF571520.1 nt Verbena litoralis voucher R. G. Olm... 1587 bp Verbena litoralis QL-PLN-00-007 553 bp View
EF571522.1 nt Verbena intermedia voucher R. G. Ol... 1591 bp Verbena intermedia QL-PLN-00-007 553 bp View
EF571523.1 nt Verbena lasiostachys voucher V. Soz... 1599 bp Verbena lasiostachys QL-PLN-00-007 553 bp View
EF571524.1 nt Verbena urticifolia voucher R. G. O... 1584 bp Verbena urticifolia QL-PLN-00-007 553 bp View
EF571525.1 nt Verbena officinalis voucher R. G. O... 1551 bp Verbena officinalis QL-PLN-00-007 553 bp View
EF571529.1 nt Verbena neomexicana var. hirtella v... 1594 bp Verbena hirtella QL-PLN-00-007 553 bp View
EF571530.1 nt Verbena orcuttiana voucher Y. W. Yu... 1588 bp Verbena orcuttiana QL-PLN-00-007 553 bp View
EF571532.1 nt Verbena macdougalii voucher Y. W. Y... 1593 bp Verbena macdougalii QL-PLN-00-007 553 bp View
EF571533.1 nt Verbena canescens voucher Y. W. Yua... 1593 bp Verbena canescens QL-PLN-00-007 553 bp View
EF571534.1 nt Verbena halei voucher Y. W. Yuan 20... 1593 bp Verbena halei QL-PLN-00-007 553 bp View
EF571535.1 nt Glandularia bipinnatifida voucher Y... 1588 bp Glandularia bipinnatifida QL-PLN-00-007 553 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.