Match details
Record ID: |
EF571529.1 |
Database: |
nt |
Go to original record |
Description: |
Verbena neomexicana var. hirtella voucher Y. W. Yuan 2005-15 (WTU) trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Verbena hirtella |
Original size: |
1594 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
673 |
1225 |
+ |
553 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 aacgacaaag agggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttga ctgcgtgggt agaggaatct ttccatcgaa acttccgaaa
251 ggatgaagga taaacgtatc tattgaatac tctatcaaat gattaatgag
301 gtgtatctgt attttttgat atgaaaaatg gaagaattgg tgtgaattga
351 ttccacattg aagaaagaat cgaatattcc ttgatcaaat cattcactcc
401 atagtccgat aaatctttga aagaactgat taatcggacg agaataaaga
451 tagagtccca ttctacatgt caataccggc aagaatgaaa tttattgtaa
501 gaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag tccctctatc
551 ccc
View other 9 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.49e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
553 |
534 |
2.49e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.