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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR730797.1 nt Persicaria glabra voucher gl chloro... 160544 bp Persicaria glabra QL-PLN-00-007 593 bp View
OR730798.1 nt Persicaria pubescens voucher FM chl... 160143 bp Persicaria pubescens QL-PLN-00-007 593 bp View
OR730800.1 nt Persicaria chinensis voucher HTM ch... 159028 bp Persicaria chinensis QL-PLN-00-007 592 bp View
OR730801.1 nt Persicaria longiseta voucher Chz1 c... 159626 bp Persicaria longiseta QL-PLN-00-007 594 bp View
OR730802.1 nt Persicaria maackiana voucher Chjy1 ... 161023 bp Persicaria maackiana QL-PLN-00-007 596 bp View
OR730803.1 nt Persicaria hastatosagittata voucher... 160749 bp Persicaria hastatosagittata QL-PLN-00-007 592 bp View
OR730804.1 nt Persicaria lapathifolia voucher Shm... 159351 bp Persicaria lapathifolia QL-PLN-00-007 593 bp View
OR730805.1 nt Persicaria perfoliata voucher kbg c... 160724 bp Persicaria perfoliata QL-PLN-00-007 601 bp View
OR743506.1 nt Eremophila cuneifolia isolate BMR07... 151774 bp Eremophila cuneifolia QL-PLN-00-007 568 bp View
OR743507.1 nt Eremophila canaliculata isolate BMR... 151687 bp Eremophila canaliculata QL-PLN-00-007 557 bp View
OR743508.1 nt Eremophila cuneifolia isolate BMR07... 151805 bp Eremophila cuneifolia QL-PLN-00-007 567 bp View
OR743509.1 nt Eremophila pilosa isolate BMR07506 ... 151611 bp Eremophila pilosa QL-PLN-00-007 557 bp View
OR743510.1 nt Eremophila cuneifolia isolate BMR07... 151814 bp Eremophila cuneifolia QL-PLN-00-007 567 bp View
OR743511.1 nt Eremophila sp. (in: birds) isolate ... 151727 bp Eremophila sp. (in: birds) QL-PLN-00-007 567 bp View
OR743512.1 nt Eremophila cuneifolia isolate BMR07... 151798 bp Eremophila cuneifolia QL-PLN-00-007 566 bp View
OR743513.1 nt Eremophila phyllopoda subsp. obliqu... 151756 bp Eremophila phyllopoda subsp. obliqua QL-PLN-00-007 568 bp View
OR743514.1 nt Eremophila canaliculata isolate BMR... 151654 bp Eremophila canaliculata QL-PLN-00-007 557 bp View
OR743515.1 nt Eremophila canaliculata isolate BMR... 151657 bp Eremophila canaliculata QL-PLN-00-007 558 bp View
OR743516.1 nt Eremophila cuneifolia isolate BMR07... 151777 bp Eremophila cuneifolia QL-PLN-00-007 566 bp View
OR743517.1 nt Eremophila sp. (in: birds) isolate ... 151740 bp Eremophila sp. (in: birds) QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.