Match details
Record ID: |
OR730805.1 |
Database: |
nt |
Go to original record |
Description: |
Persicaria perfoliata voucher kbg chloroplast, complete genome. |
Taxon: |
Persicaria perfoliata |
Original size: |
160724 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48640 |
49240 |
+ |
601 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gtttgagcct tagtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccctgg aattaaagaa
101 atgggcaatc ctgagccaac tcctgctttc caaaaggaaa gaaaaagagg
151 ataggtgcag agactcaatg gaagctgttc taacaaaggg aattgactgt
201 cttgcgttgt aatatgttat aagaattttt cgatctaaac tccaaaagtg
251 atgaagaaga aacctatagg tatacgtact taaatagaaa gactatacta
301 tgatataata aataaaaaat gcaaaaatat tgataacgac ccgaattttt
351 attttatgaa tatgaaaaaa atggaagaat ttttgtgaat cgattccaag
401 ttgaagaaag aatcgaatat tcgtttatta aattaaagca tttactccac
451 ggtttggtag atcttttgaa gaactgaccc atcggatgag aatgaagata
501 gagtcccatt ctacgtgtca atcccgacac caatgaaatt tatagtaaga
551 ggaaaatccg tcgactttat aaatcgtgag ggttcaagtc cctctatccc
601 c
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.71e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
601 |
582 |
2.71e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.