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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP963967.1 nt Leontopodium calocephalum voucher Q... 151102 bp Leontopodium calocephalum QL-PLN-00-007 526 bp View
OP963968.1 nt Leontopodium calocephalum voucher Q... 151094 bp Leontopodium calocephalum QL-PLN-00-007 526 bp View
OP963976.1 nt Leontopodium franchetii voucher Q.F... 151157 bp Leontopodium franchetii QL-PLN-00-007 526 bp View
OP963979.1 nt Leontopodium himalayanum voucher Q.... 151128 bp Leontopodium himalayanum QL-PLN-00-007 526 bp View
OP963982.1 nt Leontopodium japonicum var. saxatil... 151063 bp Leontopodium japonicum var. saxatile QL-PLN-00-007 526 bp View
OP963983.1 nt Leontopodium japonicum var. saxatil... 151063 bp Leontopodium japonicum var. saxatile QL-PLN-00-007 526 bp View
OP963986.1 nt Leontopodium longifolium voucher Q.... 151136 bp Leontopodium longifolium QL-PLN-00-007 526 bp View
OP963988.1 nt Leontopodium muscoides voucher Q.F.... 151118 bp Leontopodium muscoides QL-PLN-00-007 526 bp View
OP963991.1 nt Leontopodium ochroleucum voucher K.... 151097 bp Leontopodium ochroleucum QL-PLN-00-007 526 bp View
OQ024229.2 nt Phyllostachys violascens cultivar F... 139715 bp Phyllostachys violascens QL-PLN-00-007 614 bp View
OQ101214.1 nt Amana wanzhensis isolate WMZ1405 ch... 151199 bp Amana wanzhensis QL-PLN-00-007 569 bp View
OQ101215.1 nt Amana wanzhensis isolate WMZ1412 ch... 151258 bp Amana wanzhensis QL-PLN-00-007 564 bp View
OQ101216.1 nt Amana baohuaensis isolate WMZ1413 c... 151321 bp Amana baohuaensis QL-PLN-00-007 567 bp View
OQ101217.1 nt Amana baohuaensis isolate WMZ1415 c... 151330 bp Amana baohuaensis QL-PLN-00-007 567 bp View
OQ101218.1 nt Amana baohuaensis isolate WMZ1425 c... 151492 bp Amana baohuaensis QL-PLN-00-007 566 bp View
OQ101230.1 nt Amana wanzhensis isolate WMZ1455 ch... 151264 bp Amana wanzhensis QL-PLN-00-007 563 bp View
OQ101231.1 nt Amana sp. MW-2023a isolate WMZ1458 ... 151273 bp Amana sp. MW-2023a QL-PLN-00-007 563 bp View
OQ101232.1 nt Amana wanzhensis isolate WMZ1460 ch... 151273 bp Amana wanzhensis QL-PLN-00-007 563 bp View
OQ101233.1 nt Amana wanzhensis isolate WMZ1469 ch... 151321 bp Amana wanzhensis QL-PLN-00-007 569 bp View
OQ101235.1 nt Amana hejiaqingii isolate WMZ1487 c... 151572 bp Amana hejiaqingii QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.