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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP581016.1 nt Vitex negundo var. cannabifolia chl... 154470 bp Vitex negundo var. cannabifolia QL-PLN-00-007 559 bp View
OP581020.1 nt Paulownia fortunei chloroplast, par... 154614 bp Paulownia fortunei QL-PLN-00-007 566 bp View
OP581021.1 nt Callicarpa dichotoma chloroplast, p... 154130 bp Callicarpa dichotoma QL-PLN-00-007 565 bp View
OP597811.1 nt Scutellaria likiangensis isolate S0... 151654 bp Scutellaria likiangensis QL-PLN-00-007 556 bp View
OP597813.1 nt Scutellaria barbata isolate S03 chl... 152091 bp Scutellaria barbata QL-PLN-00-007 552 bp View
OP597814.1 nt Scutellaria baicalensis isolate S04... 151875 bp Scutellaria baicalensis QL-PLN-00-007 565 bp View
OP597818.1 nt Scutellaria amoena isolate S09 chlo... 151840 bp Scutellaria amoena QL-PLN-00-007 556 bp View
OP645384.1 nt Salvia splendens chloroplast, compl... 156047 bp Salvia splendens QL-PLN-00-007 557 bp View
OP718299.1 nt Amaranthus spinosus chloroplast, co... 150523 bp Amaranthus spinosus QL-PLN-00-007 595 bp View
OP729774.2 nt Oryza sativa Indica Group cultivar ... 134569 bp Oryza sativa Indica Group QL-PLN-00-007 615 bp View
OP748222.1 nt Physalis longifolia var. subglabrat... 156735 bp Physalis longifolia var. subglabrata QL-PLN-00-007 572 bp View
OP748223.1 nt Physalis ixocarpa chloroplast, comp... 156871 bp Physalis ixocarpa QL-PLN-00-007 572 bp View
OP779244.1 nt Impatiens huangyanensis chloroplast... 152228 bp Impatiens huangyanensis QL-PLN-00-007 569 bp View
OP820508.1 nt Hemiboea ovalifolia chloroplast, co... 153337 bp Hemiboea ovalifolia QL-PLN-00-007 550 bp View
OP832501.1 nt Zea mays voucher SUPG 021 chloropla... 140411 bp Zea mays QL-PLN-00-007 532 bp View
OP832502.1 nt Zea mays voucher SUPG 020 chloropla... 140449 bp Zea mays QL-PLN-00-007 532 bp View
OP837955.1 nt Scutellaria baicalensis isolate SBP... 151876 bp Scutellaria baicalensis QL-PLN-00-007 565 bp View
OP837956.1 nt Scutellaria baicalensis isolate SBR... 151876 bp Scutellaria baicalensis QL-PLN-00-007 565 bp View
OP837957.1 nt Scutellaria baicalensis isolate SBW... 151702 bp Scutellaria baicalensis QL-PLN-00-007 565 bp View
OP846043.1 nt Lycium ruthenicum chloroplast, comp... 154979 bp Lycium ruthenicum QL-PLN-00-007 571 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.