Match details
Record ID: |
OP597811.1 |
Database: |
nt |
Go to original record |
Description: |
Scutellaria likiangensis isolate S01 chloroplast, complete genome. |
Taxon: |
Scutellaria likiangensis |
Original size: |
151654 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47337 |
47892 |
+ |
556 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tgatgtggga
51 aacctactaa gtgataactt tcaaattcag agaacccccg gaattaataa
101 aaatgggtga tcctgatcca aatcctgttt tctgaaaaca aaggctcaaa
151 aaacgaaaaa tgggataggt gcagagactc aatggaagct gttctaacaa
201 atggagttgg ctgcgttgtt agaggaatcc tttccgcgga aacttcagaa
251 aggatgaagg ataaacgtat ctattgaata ctatatcaaa tgattaatga
301 tggcccgaat ccgtattttt gaatatgaaa aaacggaaga atcggtgtga
351 attgattcca cattgaaaaa aatcgaatat tcattcatca aatcattcac
401 tccacggtcc aataggtctt ttaaagaact aattaattgg acgagaataa
451 agatagagtc ccattctaca tgtcaatacc ggcaacaatg aaatttatag
501 taagaggaaa atccgtcgac tttaaaaatc gtgagggttc aagtccctct
551 atcccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.50e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
556 |
537 |
2.50e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.