Match details
Record ID: |
OP597813.1 |
Database: |
nt |
Go to original record |
Description: |
Scutellaria barbata isolate S03 chloroplast, complete genome. |
Taxon: |
Scutellaria barbata |
Original size: |
152091 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47790 |
48341 |
+ |
552 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tgatgtggga
51 aacctactaa gtgataactt tcaaattcag agaaaccccg gaattaataa
101 aaatgggtga tcctgatcca aatcctgttt tctgaaaaca aaggctcaaa
151 aaacgaaaaa tgggataggt gcagagactc gatggaagct gttctaacaa
201 atggagttag ctgcgttgtt agaggaatcc tttccgcgga aacttcagaa
251 aggataaacg tatctattga atactatatc aaatgattaa tgatggcccg
301 aatctgtatt tttgaatatg aaaaacggaa gaatcggtgt gaattgattc
351 cacattgaaa aaaaaaaatg gaatattcat tcatcaaatc attcactcca
401 cggtccaata ggtcttttaa agaactaatt aatcggacga gaataaagat
451 agagtcccat tctacatgtc aataccggca acaatgaaat ttatagtaag
501 aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
551 cc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.48e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
552 |
533 |
2.48e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.