European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP169588.1 nt Eremophila capricornica isolate BMR... 151577 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169589.1 nt Eremophila capricornica isolate BMR... 151588 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169590.1 nt Eremophila capricornica isolate BMR... 151567 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169591.1 nt Eremophila capricornica isolate BMR... 151573 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169592.1 nt Eremophila capricornica isolate BMR... 151571 bp Eremophila capricornica QL-PLN-00-007 556 bp View
OP169593.1 nt Eremophila capricornica isolate BMR... 151581 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169594.1 nt Eremophila sp. BMR01825 chloroplast... 151547 bp Eremophila sp. BMR01825 QL-PLN-00-007 557 bp View
OP169595.1 nt Eremophila capricornica isolate BMR... 151566 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP186458.1 nt Elsholtzia densa voucher H3050021 c... 149081 bp Elsholtzia densa QL-PLN-00-007 556 bp View
OP186460.1 nt Elsholtzia fruticosa voucher H30503... 151583 bp Elsholtzia fruticosa QL-PLN-00-007 563 bp View
OP186464.1 nt Nepeta hemsleyana voucher H3050095 ... 152177 bp Nepeta hemsleyana QL-PLN-00-007 538 bp View
OP186467.1 nt Phlomoides betonicoides voucher H30... 151794 bp Phlomoides betonicoides QL-PLN-00-007 562 bp View
OP207890.1 nt Dendrocalamus sp. chloroplast, comp... 139720 bp Dendrocalamus sp. QL-PLN-00-007 614 bp View
OP235320.1 nt Saccharum spontaneum isolate PPGN84... 141188 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235321.1 nt Saccharum spontaneum isolate PTAR84... 141188 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235322.1 nt Saccharum spontaneum isolate SaudiA... 141188 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235323.1 nt Saccharum spontaneum isolate SC-79-... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235324.1 nt Saccharum spontaneum isolate SES014... 141162 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235325.1 nt Saccharum spontaneum isolate SES184... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235326.1 nt Saccharum spontaneum isolate SES208... 141186 bp Saccharum spontaneum QL-PLN-00-007 526 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.