Match details
Record ID: |
OP207890.1 |
Database: |
nt |
Go to original record |
Description: |
Dendrocalamus sp. chloroplast, complete genome. |
Taxon: |
Dendrocalamus sp. |
Original size: |
139720 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49247 |
49860 |
+ |
614 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagt ggttctcgaa
151 ctagaatcca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg agttgattac gttgtgttgg tagtggaact ctctctaaat
251 ttagagaaag taagggcttt atacatctaa tacacacgta tagatactga
301 catagcaaac gattaatcac ggaacccata tcataatata ggttctttat
351 tcttttttag aatgaaatta ggaatgatta tgaaatagaa aattctgaat
401 ttttttagaa ttattgtgaa cccattccaa tcgaatattg agtaatcaaa
451 tccttcaatt catagttttc gagatctttt aaaaagtgga ttaatcggac
501 gaggataaag agagagtccc attctacatg tcaatactga caacaatgaa
551 atttctagta aaaggaaaat ccgtcgactt tataagttgt gagggttcaa
601 gtccctctat cccc
View other 44 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.77e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
614 |
595 |
2.77e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.