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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP136019.1 nt Dianthus chinensis chloroplast, com... 149641 bp Dianthus chinensis QL-PLN-00-007 616 bp View
OP136021.1 nt Dianthus chinensis chloroplast, com... 149641 bp Dianthus chinensis QL-PLN-00-007 616 bp View
OP136025.1 nt Dianthus chinensis chloroplast, com... 149641 bp Dianthus chinensis QL-PLN-00-007 616 bp View
OP136026.1 nt Dianthus barbatus chloroplast, comp... 149642 bp Dianthus barbatus QL-PLN-00-007 620 bp View
OP136027.1 nt Dianthus caryophyllus chloroplast, ... 149596 bp Dianthus caryophyllus QL-PLN-00-007 619 bp View
OP169573.1 nt Eremophila capricornica isolate BMR... 151593 bp Eremophila capricornica QL-PLN-00-007 556 bp View
OP169574.1 nt Eremophila capricornica isolate BMR... 151607 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169575.1 nt Eremophila capricornica isolate BMR... 151575 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169576.1 nt Eremophila latrobei subsp. glabra i... 151574 bp Eremophila latrobei subsp. glabra QL-PLN-00-007 557 bp View
OP169577.1 nt Eremophila capricornica isolate BMR... 151578 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169578.1 nt Eremophila capricornica isolate BMR... 151575 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169579.1 nt Eremophila capricornica isolate BMR... 151557 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169580.1 nt Eremophila capricornica isolate BMR... 151583 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169581.1 nt Eremophila capricornica isolate BMR... 151552 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169582.1 nt Eremophila capricornica isolate BMR... 151610 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169583.1 nt Eremophila capricornica isolate BMR... 151581 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169584.1 nt Eremophila capricornica isolate BMR... 151571 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169585.1 nt Eremophila forrestii subsp. forrest... 151588 bp Eremophila forrestii subsp. forrestii QL-PLN-00-007 557 bp View
OP169586.1 nt Eremophila capricornica isolate BMR... 151553 bp Eremophila capricornica QL-PLN-00-007 557 bp View
OP169587.1 nt Eremophila sp. BMR01818 chloroplast... 151593 bp Eremophila sp. BMR01818 QL-PLN-00-007 557 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.