Match details
Record ID: |
OP136027.1 |
Database: |
nt |
Go to original record |
Description: |
Dianthus caryophyllus chloroplast, complete genome. |
Taxon: |
Dianthus caryophyllus |
Original size: |
149596 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46570 |
47188 |
+ |
619 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gcttgagcct tagtatggaa
51 acctactaag tgaaaacttt caaattcaga gaaaccctgg aaaaaaaaaa
101 agggtaatcc tgagccaact ccttttgttt ccttttttca aaagaaaaaa
151 aggataggtg cagagactca aaggaagctg ttctaacaaa ttgggttgac
201 tgtgctgtgt tgttataaga cttcttccgt ctaaattccc ataaaaaagg
251 ggggggtaaa atcgacggag tgaaatgatt aatgacaacc cgaatctgtt
301 ctgtattttt ttttatatat tatatatata aatccatact ttattctata
351 tttagagtag agatctagaa gattaaatga aaaaatgcaa gaattcttgt
401 gaatccattc aaagttgaaa gcagaatcaa tcaagattta ttcattaaaa
451 tattcacact aactccatag tctgatagat attgtgaaga acttattaat
501 cggatgagaa taaagataga gtcccgtact acatgtcaat actgacaaca
551 atgaaattta tagtaagagg aaaatccgtc gactttaaaa atcatgaggg
601 ttcaagtccc tctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.79e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
619 |
600 |
2.79e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.