Match details
Record ID: |
OP136021.1 |
Database: |
nt |
Go to original record |
Description: |
Dianthus chinensis chloroplast, complete genome. |
Taxon: |
Dianthus chinensis |
Original size: |
149641 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46670 |
47285 |
+ |
616 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gcttgagcct tagtatggaa
51 acctactaag tgaaaacttt caaattcaga gaaaccctgg aataaaaaaa
101 agggtaatcc tgagccaact ccttttgttt ccttttttca aaagaaaaaa
151 aggataggtg cagagactca aaggaagctg ttctaacaaa ttgggttgac
201 tgtgctgtgt tgttataaga cttcttccgt ctaaattccc ataaaaaggg
251 gggtaaaatc gacggagtga aatgattaat gacaacccga atctgttctg
301 tattttttta tatatattat atatataaat ccatacttta ttctatattt
351 agagtagaga tctagaagat taaatgaaaa aatgcaagaa ttcttgtgaa
401 tccattcaaa gttgaaagca gaatcaatca agatttattc attaaaatat
451 tcacactaac tccatagtct gatagatctt gtgaagaact tattaatcgg
501 atgagaataa agatagagtc ccgtactaca tgtcaatact gacaacaatg
551 aaatttatag taagaggaaa atccgtcgac tttaaaaatc atgagggttc
601 aagtccctct atcccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
616 |
597 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.