European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 616 bp 
1     cgaaatcggt agacgctacg gacttaattg gcttgagcct tagtatggaa
51    acctactaag tgaaaacttt caaattcaga gaaaccctgg aataaaaaaa
101   agggtaatcc tgagccaact ccttttgttt ccttttttca aaagaaaaaa
151   aggataggtg cagagactca aaggaagctg ttctaacaaa ttgggttgac
201   tgtgctgtgt tgttataaga cttcttccgt ctaaattccc ataaaaaggg
251   gggtaaaatc gacggagtga aatgattaat gacaacccga atctgttctg
301   tattttttta tatatattat atatataaat ccatacttta ttctatattt
351   agagtagaga tctagaagat taaatgaaaa aatgcaagaa ttcttgtgaa
401   tccattcaaa gttgaaagca gaatcaatca agatttattc attaaaatat
451   tcacactaac tccatagtct gatagatctt gtgaagaact tattaatcgg
501   atgagaataa agatagagtc ccgtactaca tgtcaatact gacaacaatg
551   aaatttatag taagaggaaa atccgtcgac tttaaaaatc atgagggttc
601   aagtccctct atcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP136021.1 nt Dianthus chinensis chloroplast, com... 149641 bp Dianthus chinensis QL-PLN-00-007 616 bp View
OP136018.1 nt Dianthus chinensis chloroplast, com... 149641 bp Dianthus chinensis QL-PLN-00-007 616 bp View
OP136019.1 nt Dianthus chinensis chloroplast, com... 149641 bp Dianthus chinensis QL-PLN-00-007 616 bp View
OP136025.1 nt Dianthus chinensis chloroplast, com... 149641 bp Dianthus chinensis QL-PLN-00-007 616 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.