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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP007418.1 nt Buddleja asiatica chloroplast, comp... 154163 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007419.1 nt Buddleja davidii chloroplast, compl... 154112 bp Buddleja davidii QL-PLN-00-007 559 bp View
OP007420.1 nt Buddleja asiatica chloroplast, comp... 154164 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007422.1 nt Buddleja sp. GJ52 chloroplast, comp... 154347 bp Buddleja sp. GJ52 QL-PLN-00-007 559 bp View
OP013327.1 nt Buddleja officinalis chloroplast, c... 154275 bp Buddleja officinalis QL-PLN-00-007 559 bp View
OP022558.1 nt Impatiens morsei isolate 2 chloropl... 148277 bp Impatiens morsei QL-PLN-00-007 529 bp View
OP022559.1 nt Impatiens sp. 7ak chloroplast, comp... 151939 bp Impatiens sp. 7ak QL-PLN-00-007 569 bp View
OP028208.1 nt Physalis peruviana chloroplast, com... 156715 bp Physalis peruviana QL-PLN-00-007 576 bp View
OP036435.1 nt Pleioblastus fortunei chloroplast, ... 139032 bp none QL-PLN-00-007 614 bp View
OP036437.1 nt Sasaella glabra chloroplast, comple... 139067 bp Sasaella glabra QL-PLN-00-007 614 bp View
OP066245.1 nt Torenia violacea chloroplast, compl... 153998 bp Torenia violacea QL-PLN-00-007 569 bp View
OP069829.1 nt Phyllostachys edulis f. tubiformis,... 139839 bp Phyllostachys edulis f. tubiformis QL-PLN-00-007 614 bp View
OP076942.1 nt Smilax china voucher K. H. Wong 154... 158269 bp Smilax china QL-PLN-00-007 614 bp View
OP133568.1 nt Pentalinon luteum voucher C.F. Zhan... 154037 bp Pentalinon luteum QL-PLN-00-007 567 bp View
OP133575.1 nt Dregea sinensis var. corrugata vouc... 161698 bp Dregea sinensis var. corrugata QL-PLN-00-007 550 bp View
OP133576.1 nt Stephanotis volubilis voucher C.F. ... 161290 bp Stephanotis volubilis QL-PLN-00-007 550 bp View
OP133583.1 nt Pentasachme caudatum voucher C.F. Z... 158970 bp Pentasachme caudatum QL-PLN-00-007 564 bp View
OP133598.1 nt Secamone elliptica subsp. siamica v... 154770 bp Secamone elliptica subsp. siamica QL-PLN-00-007 559 bp View
OP136016.1 nt Dianthus chinensis chloroplast, com... 149602 bp Dianthus chinensis QL-PLN-00-007 617 bp View
OP136018.1 nt Dianthus chinensis chloroplast, com... 149641 bp Dianthus chinensis QL-PLN-00-007 616 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.