Match details
Record ID: |
OP028208.1 |
Database: |
nt |
Go to original record |
Description: |
Physalis peruviana chloroplast, complete genome. |
Taxon: |
Physalis peruviana |
Original size: |
156715 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49125 |
49700 |
+ |
576 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgatcacttt caaattcaga gaaaccctgg aattaacaaa
101 aatgggcaat cctgagccaa atcctgtttt ctgaaaacaa acaaaggttc
151 agaaaaaaag gataggtgca gagactcaat ggaagctatt ctaacaaatg
201 gagttaaatg cgttggtaga ggaatcttta catcgaaact tcagaaagaa
251 aaagaatgaa gtgaaggata aacgtatata catacgtatt gaatactata
301 tcaaatgatt aatgacgacc cgaatccgta ttttttctat aaaaaataga
351 agaattggtg tgaatcgatt ctacattgaa gaaagaatcg aatattcatt
401 gatcaaatca ttcaattcac tccatagtct gatagatctt ttgaagaact
451 gattaatcgg acgagaataa agatagagtc ccgttctaca tgtcaatgcc
501 ggcaacaatg aaatttatag taagaggaaa atccgtcgac tttaaaaatc
551 gtgagggttc aagtccctct atcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.59e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
576 |
557 |
2.59e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.