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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP007365.1 nt Buddleja alternifolia chloroplast, ... 154218 bp Buddleja alternifolia QL-PLN-00-007 574 bp View
OP007366.1 nt Buddleja alternifolia chloroplast, ... 154216 bp Buddleja alternifolia QL-PLN-00-007 574 bp View
OP007367.1 nt Buddleja alternifolia chloroplast, ... 154202 bp Buddleja alternifolia QL-PLN-00-007 574 bp View
OP007368.1 nt Buddleja alternifolia chloroplast, ... 154226 bp Buddleja alternifolia QL-PLN-00-007 559 bp View
OP007369.1 nt Buddleja alternifolia chloroplast, ... 154102 bp Buddleja alternifolia QL-PLN-00-007 559 bp View
OP007370.1 nt Buddleja alternifolia chloroplast, ... 154089 bp Buddleja alternifolia QL-PLN-00-007 559 bp View
OP007371.1 nt Buddleja alternifolia chloroplast, ... 154396 bp Buddleja alternifolia QL-PLN-00-007 559 bp View
OP007372.1 nt Buddleja alternifolia chloroplast, ... 154311 bp Buddleja alternifolia QL-PLN-00-007 559 bp View
OP007373.1 nt Buddleja alternifolia chloroplast, ... 154174 bp Buddleja alternifolia QL-PLN-00-007 574 bp View
OP007374.1 nt Buddleja alternifolia chloroplast, ... 154366 bp Buddleja alternifolia QL-PLN-00-007 559 bp View
OP007375.1 nt Buddleja asiatica chloroplast, comp... 154172 bp Buddleja asiatica QL-PLN-00-007 558 bp View
OP007376.1 nt Buddleja colvilei chloroplast, comp... 154148 bp Buddleja colvilei QL-PLN-00-007 559 bp View
OP007377.1 nt Buddleja colvilei chloroplast, comp... 154151 bp Buddleja colvilei QL-PLN-00-007 559 bp View
OP007379.1 nt Buddleja lindleyana chloroplast, co... 154435 bp Buddleja lindleyana QL-PLN-00-007 568 bp View
OP007380.1 nt Buddleja lindleyana chloroplast, co... 154446 bp Buddleja lindleyana QL-PLN-00-007 568 bp View
OP007381.1 nt Buddleja macrostachya chloroplast, ... 154134 bp Buddleja macrostachya QL-PLN-00-007 559 bp View
OP007383.1 nt Buddleja sessilifolia chloroplast, ... 154125 bp Buddleja sessilifolia QL-PLN-00-007 558 bp View
OP007384.1 nt Buddleja sessilifolia chloroplast, ... 154127 bp Buddleja sessilifolia QL-PLN-00-007 558 bp View
OP007385.1 nt Buddleja sessilifolia chloroplast, ... 154115 bp Buddleja sessilifolia QL-PLN-00-007 558 bp View
OP007389.1 nt Buddleja davidii chloroplast, compl... 154112 bp Buddleja davidii QL-PLN-00-007 559 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.